Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KOH18455.1Pilus assembly protein CpaC; Derived by automated computational analysis using gene prediction method: Protein Homology. (487 aa)    
Predicted Functional Partners:
KOH18450.1
Type II secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.997
KOH18448.1
Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.996
KOH18449.1
Pilus assembly protein CpaF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.996
KOH22342.1
Pilus assembly protein CpaF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.991
KOH22343.1
Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.990
KOH22344.1
Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.989
KOH22341.1
Type II secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.970
KOH18453.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.932
KOH22339.1
General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.
  
  
 
0.925
KOH22338.1
Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.903
Your Current Organism:
Vibrio parahaemolyticus
NCBI taxonomy Id: 670
Other names: ATCC 17802, Beneckea parahaemolytica, CAIM 320, CCUG 14474, CCUG 15657, CCUG 4224, CIP 75.2, DSM 10027, IFO 12711, LMG 2850, LMG:2850, NBRC 12711, NCCB 77010, NCCB 77018, NCTC 10903, NRRL B-4167, Oceanomonas parahaemolytica, Pasteurella parahaemolytica, V. parahaemolyticus
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