Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| InfB | KOH18485.1 | ACZ92_20450 | ACZ92_20435 | Translation initiation factor IF-2; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.945 |
| InfB | guaA | ACZ92_20450 | ACZ92_05185 | Translation initiation factor IF-2; Derived by automated computational analysis using gene prediction method: Protein Homology. | GMP synthase; Contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.718 |
| InfB | nusA | ACZ92_20450 | ACZ92_20455 | Translation initiation factor IF-2; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transcription elongation factor NusA; Modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.982 |
| InfB | pnp | ACZ92_20450 | ACZ92_20430 | Translation initiation factor IF-2; Derived by automated computational analysis using gene prediction method: Protein Homology. | Polynucleotide phosphorylase/polyadenylase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.956 |
| InfB | rbfA | ACZ92_20450 | ACZ92_20445 | Translation initiation factor IF-2; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 0.989 |
| InfB | rpsA | ACZ92_20450 | ACZ92_18380 | Translation initiation factor IF-2; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S1; In Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.856 |
| InfB | truB | ACZ92_20450 | ACZ92_20440 | Translation initiation factor IF-2; Derived by automated computational analysis using gene prediction method: Protein Homology. | tRNA pseudouridine synthase B; Catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the pseudouridine synthase TruB family. | 0.996 |
| KOH18485.1 | InfB | ACZ92_20435 | ACZ92_20450 | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | Translation initiation factor IF-2; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.945 |
| KOH18485.1 | KOH22331.1 | ACZ92_20435 | ACZ92_06750 | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | GTPase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.642 |
| KOH18485.1 | KOH24717.1 | ACZ92_20435 | ACZ92_00910 | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.836 |
| KOH18485.1 | guaA | ACZ92_20435 | ACZ92_05185 | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | GMP synthase; Contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.761 |
| KOH18485.1 | nusA | ACZ92_20435 | ACZ92_20455 | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | Transcription elongation factor NusA; Modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.808 |
| KOH18485.1 | pnp | ACZ92_20435 | ACZ92_20430 | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | Polynucleotide phosphorylase/polyadenylase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.948 |
| KOH18485.1 | rbfA | ACZ92_20435 | ACZ92_20445 | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 0.953 |
| KOH18485.1 | rpsA | ACZ92_20435 | ACZ92_18380 | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 30S ribosomal protein S1; In Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.951 |
| KOH18485.1 | truB | ACZ92_20435 | ACZ92_20440 | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | tRNA pseudouridine synthase B; Catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the pseudouridine synthase TruB family. | 0.933 |
| KOH22331.1 | KOH18485.1 | ACZ92_06750 | ACZ92_20435 | GTPase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.642 |
| KOH22331.1 | KOH24717.1 | ACZ92_06750 | ACZ92_00910 | GTPase; Derived by automated computational analysis using gene prediction method: Protein Homology. | DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.641 |
| KOH22331.1 | guaA | ACZ92_06750 | ACZ92_05185 | GTPase; Derived by automated computational analysis using gene prediction method: Protein Homology. | GMP synthase; Contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.718 |
| KOH22331.1 | pnp | ACZ92_06750 | ACZ92_20430 | GTPase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Polynucleotide phosphorylase/polyadenylase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.548 |
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