STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOH18614.1DNA-specific endonuclease I; Derived by automated computational analysis using gene prediction method: Protein Homology. (231 aa)    
Predicted Functional Partners:
KOH18615.1
16S rRNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.837
KOH18613.1
sprT; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.631
KOH22333.1
Collagenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.542
KOH18616.1
Catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.539
KOH20983.1
Collagenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.532
KOH22429.1
Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.524
KOH22125.1
Peptidase M9; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.517
KOH18612.1
Cytochrome B6; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.463
bamE
Membrane protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
      
 0.454
KOH18617.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0301 (AlgH) family.
       0.415
Your Current Organism:
Vibrio parahaemolyticus
NCBI taxonomy Id: 670
Other names: ATCC 17802, Beneckea parahaemolytica, CAIM 320, CCUG 14474, CCUG 15657, CCUG 4224, CIP 75.2, DSM 10027, IFO 12711, LMG 2850, LMG:2850, NBRC 12711, NCCB 77010, NCCB 77018, NCTC 10903, NRRL B-4167, Oceanomonas parahaemolytica, Pasteurella parahaemolytica, V. parahaemolyticus
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