Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
KOH17293.1RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (1050 aa)    
Predicted Functional Partners:
KOH17292.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.994
KOH21193.1
Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 0.978
KOH22886.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.975
KOH22135.1
Acriflavin resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.975
KOH17479.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.966
KOH21312.1
Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  0.965
KOH19268.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  0.927
KOH24859.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.884
KOH22776.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.867
KOH18095.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.857
Your Current Organism:
Vibrio parahaemolyticus
NCBI taxonomy Id: 670
Other names: ATCC 17802, Beneckea parahaemolytica, CAIM 320, CCUG 14474, CCUG 15657, CCUG 4224, CIP 75.2, DSM 10027, IFO 12711, LMG 2850, LMG:2850, NBRC 12711, NCCB 77010, NCCB 77018, NCTC 10903, NRRL B-4167, Oceanomonas parahaemolytica, Pasteurella parahaemolytica, V. parahaemolyticus
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