STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANP71142.1Pfam:pfam00106 short chain dehydrogenase. (678 aa)    
Predicted Functional Partners:
ANP71141.1
Carbohydrate kinase; Pfam:pfam02782 FGGY family of carbohydrate kinases, C-terminal domain.
 
 0.981
ANP71143.1
Rhamnose isomerase.
 
     0.916
ANP71529.1
Alpha-L-rhamnosidase; Pfam:pfam05592 Bacterial alpha-L-rhamnosidase.
 
 
 0.723
ANP71140.1
Putative sortase-sorted membrane protein.
       0.682
ANP71144.1
LacI family transcription regulator; Pfam:pfam13377 Periplasmic binding protein-like domain.
 
   0.606
ANP71136.1
Pfam:pfam01070 FMN-dependent dehydrogenase.
  
 
 0.513
ANP71139.1
C56 (PfpI) family peptidase; Pfam:pfam01965 DJ-1/PfpI family.
  
    0.458
ANP72628.1
ACP S-malonyltransferase; Pfam:pfam00698 Acyl transferase domain.
  
 
 0.435
ANP72291.1
Arylsulfatase AtsB; Pfam:pfam00884 Sulfatase.
  
 
 0.433
ANP74240.1
Arylsulfatase; Pfam:pfam00884 Sulfatase.
  
 
 0.433
Your Current Organism:
Cryobacterium arcticum
NCBI taxonomy Id: 670052
Other names: C. arcticum, Cryobacterium arcticum Bajerski et al. 2011, Cryobacterium sp. SK1, DSM 22823, NCCB 100316, strain SK1
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