STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANP71183.1Pfam:pfam00440 Bacterial regulatory proteins, tetR family. (238 aa)    
Predicted Functional Partners:
ANP71180.1
Pfam:pfam07690 Major Facilitator Superfamily.
  
    0.817
ANP71182.1
Hypothetical protein.
       0.780
ANP71181.1
Pfam:pfam00202 Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.773
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
   
    0.743
ANP71179.1
Hypothetical protein.
       0.613
ANP72023.1
Hypothetical protein; Pfam:pfam09972 Predicted membrane protein (DUF2207).
   
    0.582
ANP73440.1
Hypothetical protein; Pfam:pfam09972 Predicted membrane protein (DUF2207).
   
    0.582
ANP73304.1
Pfam:pfam01168 Alanine racemase, N-terminal domain.
 
     0.484
ANP71178.1
Flavodoxin; Pfam:pfam03358 NADPH-dependent FMN reductase.
       0.468
ANP71184.1
CMP deaminase; Pfam:pfam00383 Cytidine and deoxycytidylate deaminase zinc-binding region.
       0.413
Your Current Organism:
Cryobacterium arcticum
NCBI taxonomy Id: 670052
Other names: C. arcticum, Cryobacterium arcticum Bajerski et al. 2011, Cryobacterium sp. SK1, DSM 22823, NCCB 100316, strain SK1
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