STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANP71212.1Pfam:pfam01578 Cytochrome C assembly protein. (332 aa)    
Predicted Functional Partners:
ANP71211.1
Cytochrome C biogenesis protein; Pfam:pfam05140 ResB-like family.
  
 0.996
ANP71210.1
Pfam:pfam02683 Cytochrome C biogenesis protein transmembrane region.
 
  
 0.995
ANP71209.1
Alkyl hydroperoxide reductase; Pfam:pfam00578 AhpC/TSA family.
 
  
 0.984
ANP71208.1
Phosphoglycerate mutase; Pfam:pfam00300 Histidine phosphatase superfamily (branch 1).
 
    0.893
ANP72675.1
Pfam:pfam13631 Cytochrome b(N-terminal)/b6/petB.
  
  
 0.718
hemA
glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
 
  
 0.694
ANP71097.1
Protoporphyrinogen oxidase; Pfam:pfam13450 NAD(P)-binding Rossmann-like domain.
 
  
 0.671
ANP72677.1
Cystathionine beta-lyase; Pfam:pfam00034 Cytochrome c.
 
  
 0.633
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
 
  
 0.632
aspS
Aspartyl-tRNA synthetase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 2 subfamily.
       0.621
Your Current Organism:
Cryobacterium arcticum
NCBI taxonomy Id: 670052
Other names: C. arcticum, Cryobacterium arcticum Bajerski et al. 2011, Cryobacterium sp. SK1, DSM 22823, NCCB 100316, strain SK1
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