STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANP71223.1Pfam:pfam14012 Protein of unknown function (DUF4229). (116 aa)    
Predicted Functional Partners:
ANP72969.1
Pfam:pfam09579 Sporulation protein YtfJ (Spore_YtfJ).
  
     0.692
ANP71107.1
Hypothetical protein.
  
     0.654
menD
2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Belongs to the TPP enzyme family. MenD subfamily.
       0.653
ANP71224.1
Membrane protein; Pfam:pfam13396 Phospholipase_D-nuclease N-terminal.
       0.628
ANP73944.1
Putative integral membrane protein.
  
     0.602
ANP71607.1
Exopolysaccharide production protein; Pfam:pfam04932 O-Antigen ligase.
  
     0.567
ANP71608.1
Exopolysaccharide production protein; Pfam:pfam04932 O-Antigen ligase.
  
     0.551
ANP71790.1
Hypothetical protein.
  
     0.485
ANP72784.1
Hypothetical protein.
  
     0.479
ANP74138.1
Hypothetical protein.
  
     0.479
Your Current Organism:
Cryobacterium arcticum
NCBI taxonomy Id: 670052
Other names: C. arcticum, Cryobacterium arcticum Bajerski et al. 2011, Cryobacterium sp. SK1, DSM 22823, NCCB 100316, strain SK1
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