STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANP71584.1Hypothetical protein; Pfam:pfam03703 Bacterial PH domain. (189 aa)    
Predicted Functional Partners:
ANP71583.1
Biofilm PGA synthesis protein PgaB; Pfam:pfam03099 Biotin/lipoate A/B protein ligase family.
       0.846
ANP71582.1
Methylmalonyl-CoA carboxyltransferase; Pfam:pfam01039 Carboxyl transferase domain.
       0.634
ANP71581.1
Hypothetical protein.
       0.632
ANP74074.1
Hypothetical protein; Pfam:pfam03703 Bacterial PH domain.
  
  
 0.627
ANP74718.1
Conserved membrane protein.
 
     0.600
ANP71647.1
Hypothetical protein.
  
     0.595
ANP73944.1
Putative integral membrane protein.
  
     0.532
ANP73720.1
Hypothetical protein; Pfam:pfam13625 Helicase conserved C-terminal domain.
  
     0.518
rimM
Ribosome maturation factor RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.
 
     0.517
ANP74712.1
Hypothetical protein.
  
     0.471
Your Current Organism:
Cryobacterium arcticum
NCBI taxonomy Id: 670052
Other names: C. arcticum, Cryobacterium arcticum Bajerski et al. 2011, Cryobacterium sp. SK1, DSM 22823, NCCB 100316, strain SK1
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