STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANP71957.1Hypothetical protein; Pfam:pfam02190 ATP-dependent protease La (LON) domain. (220 aa)    
Predicted Functional Partners:
ANP72445.1
Molybdopterin biosynthesis MoeZ; Pfam:pfam00899 ThiF family.
    
 0.557
ANP73773.1
Molybdopterin biosynthesis MoeZ; Pfam:pfam00899 ThiF family.
    
 0.557
ANP73391.1
Hypothetical protein; Pfam:pfam13476 AAA domain.
    
 0.535
ANP71737.1
Pfam:pfam00440 Bacterial regulatory proteins, tetR family.
  
     0.516
sbcD
DNA repair exonuclease; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
    
 0.512
ANP71426.1
Pfam:pfam00535 Glycosyl transferase family 2.
 
     0.497
ANP71958.1
6-aminohexanoate-cyclic-dimer hydrolase; Pfam:pfam01425 Amidase; Belongs to the amidase family.
       0.456
ANP71959.1
Pfam:pfam00583 Acetyltransferase (GNAT) family.
       0.442
Your Current Organism:
Cryobacterium arcticum
NCBI taxonomy Id: 670052
Other names: C. arcticum, Cryobacterium arcticum Bajerski et al. 2011, Cryobacterium sp. SK1, DSM 22823, NCCB 100316, strain SK1
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