STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANP72501.1Lycopene e-cyclase isoprenoid transferase B. (116 aa)    
Predicted Functional Partners:
ANP72502.1
Carotenoid epsilon cyclase.
 
  
 0.989
ANP72500.1
Prenyltransferase; Pfam:pfam01040 UbiA prenyltransferase family.
 
   
 0.984
ANP72503.1
Phytoene dehydrogenase; Pfam:pfam13450 NAD(P)-binding Rossmann-like domain.
 
  
 0.977
ANP72504.1
Pfam:pfam00494 Squalene/phytoene synthase.
 
  
 0.972
ANP72505.1
CrtE protein; Pfam:pfam00348 Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
 
  
 0.931
idi
Isopentenyl-diphosphate Delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).
 
  
 0.921
ANP72507.1
Pfam:pfam01047 MarR family.
 
     0.733
ANP72499.1
RNA-binding protein S4; Pfam:pfam01479 S4 domain.
       0.634
lgt
Diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
 
    0.581
ANP72036.1
Rhamnosyltransferase; Pfam:pfam00535 Glycosyl transferase family 2.
 
     0.564
Your Current Organism:
Cryobacterium arcticum
NCBI taxonomy Id: 670052
Other names: C. arcticum, Cryobacterium arcticum Bajerski et al. 2011, Cryobacterium sp. SK1, DSM 22823, NCCB 100316, strain SK1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.