STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANP73466.1Allophanate hydrolase; Pfam:pfam01425 Amidase. (618 aa)    
Predicted Functional Partners:
ANP71229.1
Urea carboxylase; Pfam:pfam02626 Allophanate hydrolase subunit 2.
  
 0.998
ANP73469.1
Hypothetical protein; Pfam:pfam00857 Isochorismatase family.
 
  
  0.980
ANP73467.1
Urea carboxylase-associated protein 1; Pfam:pfam09347 Domain of unknown function (DUF1989).
 
  
 0.973
ANP73468.1
Urea carboxylase-associated protein 2; Pfam:pfam09347 Domain of unknown function (DUF1989).
 
  
 0.973
gatB
glutamyl-tRNA amidotransferase subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.
 
 0.940
ANP71230.1
Amidase; Pfam:pfam01425 Amidase.
  
  
 
0.906
ANP71575.1
acetyl-CoA carboxylase; Pfam:pfam02786 Carbamoyl-phosphate synthase L chain, ATP binding domain.
    
 0.905
ANP71228.1
Urea carboxylase; Pfam:pfam09347 Domain of unknown function (DUF1989).
 
  
 0.888
ANP71227.1
Urea carboxylase; Pfam:pfam09347 Domain of unknown function (DUF1989).
 
  
 0.887
gatC
Glutamyl-tRNA amidotransferase; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.
  
 
 0.858
Your Current Organism:
Cryobacterium arcticum
NCBI taxonomy Id: 670052
Other names: C. arcticum, Cryobacterium arcticum Bajerski et al. 2011, Cryobacterium sp. SK1, DSM 22823, NCCB 100316, strain SK1
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