STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANP73766.1Hypothetical protein; Pfam:pfam10099 Anti-sigma-K factor rskA. (321 aa)    
Predicted Functional Partners:
ANP73767.1
RNA polymerase sigma factor SigK; Pfam:pfam04542 Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.990
ANP73228.1
RNA polymerase sigma factor SigK; Pfam:pfam04542 Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.940
ANP71503.1
RNA polymerase subunit sigma-24; Pfam:pfam04542 Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.850
ANP72502.1
Carotenoid epsilon cyclase.
  
     0.528
ANP73364.1
Oxidoreductase; Pfam:pfam00174 Oxidoreductase molybdopterin binding domain.
 
     0.508
ANP74615.1
Hypothetical protein; Pfam:pfam03372 Endonuclease/Exonuclease/phosphatase family.
  
     0.473
ANP72500.1
Prenyltransferase; Pfam:pfam01040 UbiA prenyltransferase family.
  
     0.471
ANP73768.1
DNA-directed RNA polymerase subunit beta.
       0.449
ANP73765.1
Pfam:pfam01063 Aminotransferase class IV.
       0.447
ANP74681.1
RNA polymerase sigma factor; Pfam:pfam04542 Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 
 0.412
Your Current Organism:
Cryobacterium arcticum
NCBI taxonomy Id: 670052
Other names: C. arcticum, Cryobacterium arcticum Bajerski et al. 2011, Cryobacterium sp. SK1, DSM 22823, NCCB 100316, strain SK1
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