STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR32515.1D-amino-acid dehydrogenase. (418 aa)    
Predicted Functional Partners:
SFR47035.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
  
 0.963
SFR56032.1
Sarcosine oxidase subunit alpha; Belongs to the GcvT family.
  
 0.963
SFR32509.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
     0.809
SFR47026.1
Sarcosine oxidase subunit delta.
  
  0.790
SFR35081.1
Glutamate synthase (NADPH) large subunit.
  
 
 0.781
SFR47043.1
Sarcosine oxidase subunit gamma.
  
  0.773
SFR56046.1
Sarcosine oxidase subunit delta.
  
  0.769
SFR56021.1
Sarcosine oxidase subunit gamma.
   
  0.760
SFR32498.1
Hypothetical protein.
 
    0.691
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
 
 0.665
Your Current Organism:
Litoreibacter janthinus
NCBI taxonomy Id: 670154
Other names: DSM 26921, JCM 16492, KMM 3842, L. janthinus, Litoreibacter janthinus Romanenko et al. 2011, NRIC 0772, alpha proteobacterium KMM 3842
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