STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR33005.1Deoxyribodipyrimidine photolyase-related protein. (508 aa)    
Predicted Functional Partners:
SFR32999.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
     0.937
SFR51030.1
Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family.
 
   
 0.651
leuA
2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily.
       0.578
SFR44014.1
Hypothetical protein; Manually curated.
 
     0.489
SFR48567.1
Glutathione peroxidase; Belongs to the glutathione peroxidase family.
 
   
 0.464
SFR36777.1
Hypothetical protein.
 
   
 0.441
SFR33010.1
Hypothetical protein.
       0.431
SFR59514.1
Protein of unknown function.
 
     0.417
Your Current Organism:
Litoreibacter janthinus
NCBI taxonomy Id: 670154
Other names: DSM 26921, JCM 16492, KMM 3842, L. janthinus, Litoreibacter janthinus Romanenko et al. 2011, NRIC 0772, alpha proteobacterium KMM 3842
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.