STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR34019.1Repeat domain-containing protein. (493 aa)    
Predicted Functional Partners:
SFR34012.1
Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain.
 
     0.963
SFR34003.1
Monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-).
 
     0.898
SFR33997.1
D-xylose transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
     0.827
SFR33991.1
Monosaccharide ABC transporter ATP-binding protein, CUT2 family (TC 3.A.1.2.-).
 
     0.822
SFR34024.1
Cytochrome c peroxidase.
 
   
 0.788
ribB
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.747
SFR39940.1
Cytochrome c peroxidase.
 
   
 0.664
SFR49521.1
TolB amino-terminal domain-containing protein.
   
  0.547
xylA
D-xylose isomerase; Belongs to the xylose isomerase family.
 
     0.483
SFR40605.1
Putative tricarboxylic transport membrane protein.
  
     0.431
Your Current Organism:
Litoreibacter janthinus
NCBI taxonomy Id: 670154
Other names: DSM 26921, JCM 16492, KMM 3842, L. janthinus, Litoreibacter janthinus Romanenko et al. 2011, NRIC 0772, alpha proteobacterium KMM 3842
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