STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR34491.1Hypothetical protein. (342 aa)    
Predicted Functional Partners:
SFR34466.1
Tripartite-type tricarboxylate transporter, receptor component TctC.
 
    0.738
SFR34472.1
TctA family transporter.
 
    0.640
SFR34479.1
Hypothetical protein.
 
     0.607
SFR34453.1
Two-component system, OmpR family, sensor histidine kinase TctE.
 
     0.578
SFR34497.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.568
SFR34504.1
Tricarballylate dehydrogenase.
 
     0.568
SFR34510.1
Citrate/tricarballylate utilization protein.
 
     0.523
SFR40605.1
Putative tricarboxylic transport membrane protein.
 
    0.490
SFR34486.1
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
     0.470
Your Current Organism:
Litoreibacter janthinus
NCBI taxonomy Id: 670154
Other names: DSM 26921, JCM 16492, KMM 3842, L. janthinus, Litoreibacter janthinus Romanenko et al. 2011, NRIC 0772, alpha proteobacterium KMM 3842
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.