STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR37401.1Hypothetical protein. (109 aa)    
Predicted Functional Partners:
SFR37409.1
OmpA-OmpF porin, OOP family.
 
     0.905
SFR37434.1
Hypothetical protein.
 
     0.836
SFR42176.1
Hypothetical protein.
  
     0.773
SFR57028.1
Hypothetical protein.
  
     0.773
SFR41053.1
Rhomboid family protein.
  
     0.765
SFR42052.1
Hypothetical protein.
  
     0.765
SFR49659.1
Hypothetical protein.
  
     0.765
SFR32951.1
SseB protein N-terminal domain-containing protein.
  
     0.764
SFR55414.1
Hypothetical protein.
  
     0.760
SFR53273.1
Hypothetical protein.
  
     0.753
Your Current Organism:
Litoreibacter janthinus
NCBI taxonomy Id: 670154
Other names: DSM 26921, JCM 16492, KMM 3842, L. janthinus, Litoreibacter janthinus Romanenko et al. 2011, NRIC 0772, alpha proteobacterium KMM 3842
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.