STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR40605.1Putative tricarboxylic transport membrane protein. (162 aa)    
Predicted Functional Partners:
SFR40598.1
Putative tricarboxylic transport membrane protein.
 
  
 0.971
SFR40610.1
Putative tricarboxylic transport membrane protein.
 
 
 0.954
SFR40623.1
Protein of unknown function.
 
     0.915
SFR40617.1
Protein of unknown function.
 
     0.892
SFR40580.1
iron(III) transport system substrate-binding protein.
 
     0.723
SFR40630.1
Transcriptional regulator, GntR family.
       0.701
SFR34472.1
TctA family transporter.
 
 
 0.608
SFR34466.1
Tripartite-type tricarboxylate transporter, receptor component TctC.
 
  
 0.598
SFR40586.1
Two-component system, OmpR family, sensor histidine kinase TctE.
     
 0.578
SFR42555.1
Putative tricarboxylic transport membrane protein.
  
 
 0.546
Your Current Organism:
Litoreibacter janthinus
NCBI taxonomy Id: 670154
Other names: DSM 26921, JCM 16492, KMM 3842, L. janthinus, Litoreibacter janthinus Romanenko et al. 2011, NRIC 0772, alpha proteobacterium KMM 3842
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