STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR41506.1Fructose-1,6-bisphosphatase. (276 aa)    
Predicted Functional Partners:
SFR36224.1
Myo-inositol-1(or 4)-monophosphatase.
  
  
  0.888
SFR43142.1
Myo-inositol-1(or 4)-monophosphatase.
  
  
 
0.775
SFR41495.1
Peptidyl-dipeptidase Dcp Metallo peptidase. MEROPS family M03A.
       0.773
cysC
Sulfate adenylyltransferase; Catalyzes the synthesis of activated sulfate.
  
 
 0.716
SFR41489.1
Amino acid ABC transporter membrane protein, PAAT family.
       0.613
SFR41480.1
Amino acid ABC transporter substrate-binding protein, PAAT family.
       0.608
nusA
NusA antitermination factor; Participates in both transcription termination and antitermination.
   
   0.574
nusG
Transcription antitermination protein nusG; Participates in transcription elongation, termination and antitermination.
   
 
 0.571
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
   0.547
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.546
Your Current Organism:
Litoreibacter janthinus
NCBI taxonomy Id: 670154
Other names: DSM 26921, JCM 16492, KMM 3842, L. janthinus, Litoreibacter janthinus Romanenko et al. 2011, NRIC 0772, alpha proteobacterium KMM 3842
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.