STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR42451.1Altronate hydrolase. (500 aa)    
Predicted Functional Partners:
SFR46666.1
Fructuronate reductase.
 
 0.827
uxuA
D-mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
 
 0.821
SFR42459.1
Predicted dehydrogenase.
 
     0.801
SFR46614.1
2-dehydro-3-deoxygluconokinase.
 
  
 0.771
SFR39416.1
Mannitol 2-dehydrogenase.
 
 0.725
SFR44574.1
(2R)-3-sulfolactate dehydrogenase (NADP+); Belongs to the LDH2/MDH2 oxidoreductase family.
    
 0.720
SFR38724.1
Ribose 5-phosphate isomerase B.
     
 0.695
SFR42443.1
Uncharacterized conserved protein.
       0.675
SFR42419.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
     0.664
SFR42435.1
Ectoine hydroxylase-related dioxygenase, phytanoyl-CoA dioxygenase (PhyH) family.
 
     0.662
Your Current Organism:
Litoreibacter janthinus
NCBI taxonomy Id: 670154
Other names: DSM 26921, JCM 16492, KMM 3842, L. janthinus, Litoreibacter janthinus Romanenko et al. 2011, NRIC 0772, alpha proteobacterium KMM 3842
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