STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR43825.1Cobaltochelatase CobT subunit. (625 aa)    
Predicted Functional Partners:
SFR43834.1
Cobaltochelatase CobS subunit.
 
 
 0.996
cobB
Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of hydrogenobyrinate, using either L- glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.
     
  0.911
SFR43841.1
DnaJ domain-containing protein.
 
     0.888
SFR33414.1
Cobaltochelatase CobN subunit.
     
 0.887
SFR56577.1
GcrA cell cycle regulator.
  
     0.699
SFR34615.1
YggT family protein.
  
     0.653
SFR43817.1
Hypothetical protein.
       0.651
SFR37639.1
Hypothetical protein.
  
     0.628
SFR35432.1
Hypothetical protein.
  
     0.617
SFR43801.1
Uncharacterized conserved protein, DUF427 family.
       0.615
Your Current Organism:
Litoreibacter janthinus
NCBI taxonomy Id: 670154
Other names: DSM 26921, JCM 16492, KMM 3842, L. janthinus, Litoreibacter janthinus Romanenko et al. 2011, NRIC 0772, alpha proteobacterium KMM 3842
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.