STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR46488.1(S)-ureidoglycine aminohydrolase. (271 aa)    
Predicted Functional Partners:
SFR46480.1
Ureidoglycolate lyase.
 
  
  0.992
SFR46496.1
OHCU decarboxylase.
 
     0.885
SFR54019.1
2,4-diketo-3-deoxy-L-fuconate hydrolase.
     
  0.837
SFR46277.1
N-carbamoyl-L-amino-acid hydrolase.
 
 
 0.778
SFR46506.1
5-hydroxyisourate hydrolase; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
   
 0.764
SFR36823.1
N-carbamoyl-L-amino-acid hydrolase.
  
 
 0.733
SFR46470.1
Nucleobase:cation symporter-2, NCS2 family.
 
     0.720
SFR46538.1
Uncharacterized membrane protein.
 
     0.572
SFR44574.1
(2R)-3-sulfolactate dehydrogenase (NADP+); Belongs to the LDH2/MDH2 oxidoreductase family.
    
 0.503
SFR46515.1
Uncharacterized membrane protein.
       0.446
Your Current Organism:
Litoreibacter janthinus
NCBI taxonomy Id: 670154
Other names: DSM 26921, JCM 16492, KMM 3842, L. janthinus, Litoreibacter janthinus Romanenko et al. 2011, NRIC 0772, alpha proteobacterium KMM 3842
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