STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR48821.1Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily. (694 aa)    
Predicted Functional Partners:
SFR48835.1
Peptide/nickel transport system permease protein.
 
 
  0.975
SFR48828.1
Peptide/nickel transport system permease protein.
 
 
  0.974
SFR33970.1
Peptide/nickel transport system permease protein.
 
  0.952
SFR54886.1
Peptide/nickel transport system permease protein.
 
  0.951
SFR44445.1
Peptide/nickel transport system permease protein.
 
  0.944
SFR37307.1
Peptide/nickel transport system permease protein.
 
  0.936
SFR48840.1
Peptide/nickel transport system substrate-binding protein.
 
 
  0.917
SFR54832.1
Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
0.847
SFR33977.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
0.842
SFR41845.1
Trimethylamine---corrinoid protein Co-methyltransferase; Belongs to the trimethylamine methyltransferase family.
  
  
  0.743
Your Current Organism:
Litoreibacter janthinus
NCBI taxonomy Id: 670154
Other names: DSM 26921, JCM 16492, KMM 3842, L. janthinus, Litoreibacter janthinus Romanenko et al. 2011, NRIC 0772, alpha proteobacterium KMM 3842
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.