STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR50428.1Phospholipase/carboxylesterase. (223 aa)    
Predicted Functional Partners:
SFR50436.1
DNA-3-methyladenine glycosylase II.
    
 0.962
SFR50446.1
precorrin-6A/cobalt-precorrin-6A reductase.
       0.852
cbiD
cobalt-precorrin-5B (C1)-methyltransferase; Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A.
       0.851
SFR50483.1
Predicted arabinose efflux permease, MFS family.
     
 0.806
SFR40261.1
Sulfite reductase (NADPH) flavoprotein alpha-component.
    
 0.779
SFR39022.1
Z1 domain-containing protein.
   
 
  0.742
SFR50465.1
uroporphyrin-III C-methyltransferase; Belongs to the precorrin methyltransferase family.
       0.641
cobB
Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of hydrogenobyrinate, using either L- glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.
       0.640
SFR35784.1
Nucleoside-diphosphate-sugar epimerase.
 
      0.487
SFR55595.1
Ankyrin repeat.
    
  0.483
Your Current Organism:
Litoreibacter janthinus
NCBI taxonomy Id: 670154
Other names: DSM 26921, JCM 16492, KMM 3842, L. janthinus, Litoreibacter janthinus Romanenko et al. 2011, NRIC 0772, alpha proteobacterium KMM 3842
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