STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR50967.1Ala-tRNA(Pro) hydrolase. (237 aa)    
Predicted Functional Partners:
SFR50988.1
Cysteine synthase A.
  
    0.854
SFR50979.1
Small-conductance mechanosensitive channel.
       0.784
SFR51009.1
Hypothetical protein.
       0.747
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
     
0.737
SFR50998.1
Nudix-type nucleoside diphosphatase, YffH/AdpP family.
       0.726
SFR51018.1
Cyclopropane-fatty-acyl-phospholipid synthase.
       0.634
SFR51030.1
Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family.
       0.464
SFR51039.1
Cysteine desulfurase family protein, VC1184 subfamily.
       0.420
Your Current Organism:
Litoreibacter janthinus
NCBI taxonomy Id: 670154
Other names: DSM 26921, JCM 16492, KMM 3842, L. janthinus, Litoreibacter janthinus Romanenko et al. 2011, NRIC 0772, alpha proteobacterium KMM 3842
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