STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR54117.1L-fuconolactonase. (275 aa)    
Predicted Functional Partners:
SFR54094.1
D-threo-aldose 1-dehydrogenase.
 
  0.993
SFR54106.1
L-fucose mutarotase; Belongs to the RbsD / FucU family.
     0.904
SFR54062.1
2-keto-3-deoxy-L-fuconate dehydrogenase.
 
 
  0.798
SFR45249.1
4-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family.
  
  
 0.784
SFR54084.1
Transcriptional regulator, GntR family.
 
     0.780
SFR41818.1
Reductive dehalogenase.
     
 0.720
SFR40887.1
Predicted oxidoreductase.
  
 
  0.715
SFR39998.1
L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
  
  0.699
SFR54030.1
Monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-).
 
     0.699
SFR54074.1
Altronate hydrolase.
 
     0.621
Your Current Organism:
Litoreibacter janthinus
NCBI taxonomy Id: 670154
Other names: DSM 26921, JCM 16492, KMM 3842, L. janthinus, Litoreibacter janthinus Romanenko et al. 2011, NRIC 0772, alpha proteobacterium KMM 3842
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