STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR56288.1Protein of unknown function. (239 aa)    
Predicted Functional Partners:
SFR56298.1
ATP-dependent helicase HrpB.
       0.775
SFR56277.1
LAO/AO transport system kinase.
       0.639
SFR56308.1
Carbon-monoxide dehydrogenase large subunit.
       0.508
SFR56317.1
Hypothetical protein.
       0.508
SFR56329.1
Methyltransferase domain-containing protein.
       0.508
SFR33546.1
Ser/Thr protein kinase RdoA involved in Cpx stress response, MazF antagonist.
  
     0.496
SFR56339.1
Uncharacterized protein, PA2063/DUF2235 family.
 
     0.475
Your Current Organism:
Litoreibacter janthinus
NCBI taxonomy Id: 670154
Other names: DSM 26921, JCM 16492, KMM 3842, L. janthinus, Litoreibacter janthinus Romanenko et al. 2011, NRIC 0772, alpha proteobacterium KMM 3842
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.