STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR56308.1Carbon-monoxide dehydrogenase large subunit. (762 aa)    
Predicted Functional Partners:
SFR43914.1
Carbon monoxide dehydrogenase, small subunit.
 0.999
SFR46006.1
Carbon-monoxide dehydrogenase small subunit.
 0.992
SFR46546.1
Carbon-monoxide dehydrogenase small subunit.
 0.992
SFR41631.1
Xanthine dehydrogenase small subunit.
  
  0.984
SFR40305.1
Isoquinoline 1-oxidoreductase, alpha subunit.
 
  0.959
SFR46025.1
Carbon-monoxide dehydrogenase medium subunit.
 
 0.938
SFR46553.1
Carbon-monoxide dehydrogenase medium subunit.
 
 0.938
SFR46833.1
Nicotinate dehydrogenase subunit A.
  0.933
SFR45996.1
Hypothetical protein.
 
 0.920
SFR43920.1
Carbon monoxide dehydrogenase, medium subunit.
 0.915
Your Current Organism:
Litoreibacter janthinus
NCBI taxonomy Id: 670154
Other names: DSM 26921, JCM 16492, KMM 3842, L. janthinus, Litoreibacter janthinus Romanenko et al. 2011, NRIC 0772, alpha proteobacterium KMM 3842
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.