STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lcdHCarnitine 3-dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine. (480 aa)    
Predicted Functional Partners:
SFR40029.1
Phosphopantetheine--protein transferase domain-containing protein; Manually curated; Belongs to the P-Pant transferase superfamily.
  
 0.983
SFR56929.1
Uncharacterized conserved protein, DUF849 family.
 
 
  0.960
SFR56898.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
 0.911
SFR42225.1
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.
 
 0.886
SFR35911.1
crotonobetainyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 0.885
SFR35923.1
acyl-CoA dehydrogenase.
 
 0.885
SFR44938.1
Short chain enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
0.877
SFR48226.1
3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family.
  
 0.864
SFR56920.1
Apolipoprotein D and lipocalin family protein.
 
     0.850
SFR65124.1
acyl-CoA thioesterase YciA.
  
 
 0.843
Your Current Organism:
Litoreibacter janthinus
NCBI taxonomy Id: 670154
Other names: DSM 26921, JCM 16492, KMM 3842, L. janthinus, Litoreibacter janthinus Romanenko et al. 2011, NRIC 0772, alpha proteobacterium KMM 3842
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