STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR57386.1Serine/threonine-protein kinase HipA. (433 aa)    
Predicted Functional Partners:
SFR57391.1
HTH-type transcriptional regulator / antitoxin HipB.
 
 
 0.997
SFR57146.1
Helix-turn-helix.
   
 
 0.971
SFR36493.1
Transcriptional regulator, XRE family with cupin sensor.
  
 
 0.460
SFR57380.1
Hypothetical protein.
       0.416
SFR43133.1
Transcriptional regulator, contains XRE-family HTH domain.
  
 
 0.413
SFR44758.1
Helix-turn-helix.
  
 
 0.413
SFR49278.1
Hypothetical protein.
  
 
 0.413
SFR49711.1
Transcriptional regulator, XRE family with cupin sensor.
  
 
 0.413
SFR51815.1
Hypothetical protein.
  
 
 0.413
SFR55489.1
Hypothetical protein.
  
 
 0.413
Your Current Organism:
Litoreibacter janthinus
NCBI taxonomy Id: 670154
Other names: DSM 26921, JCM 16492, KMM 3842, L. janthinus, Litoreibacter janthinus Romanenko et al. 2011, NRIC 0772, alpha proteobacterium KMM 3842
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.