STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR64184.1NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family. (254 aa)    
Predicted Functional Partners:
SFR35081.1
Glutamate synthase (NADPH) large subunit.
     
 0.796
SFR40029.1
Phosphopantetheine--protein transferase domain-containing protein; Manually curated; Belongs to the P-Pant transferase superfamily.
  
 0.709
SFR41818.1
Reductive dehalogenase.
   
 0.620
SFR37666.1
7-alpha-hydroxysteroid dehydrogenase.
  
     0.580
lcdH
Carnitine 3-dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
  
 0.562
SFR64161.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
  
  0.554
SFR35631.1
2,4-dienoyl-CoA reductase (NADPH2).
 
  
 0.540
SFR51522.1
Pyruvate dehydrogenase E1 component beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
  
 0.537
SFR51647.1
[acyl-carrier-protein] S-malonyltransferase.
   
  0.532
SFR64192.1
Hypothetical protein.
       0.526
Your Current Organism:
Litoreibacter janthinus
NCBI taxonomy Id: 670154
Other names: DSM 26921, JCM 16492, KMM 3842, L. janthinus, Litoreibacter janthinus Romanenko et al. 2011, NRIC 0772, alpha proteobacterium KMM 3842
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