Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDW10605.1 | SDW26525.1 | SAMN04488001_0295 | SAMN04488001_0693 | Cation transport protein ChaC; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family. | Uncharacterized conserved protein, contains Mth938-like domain. | 0.469 |
SDW26328.1 | SDW26487.1 | SAMN04488001_0688 | SAMN04488001_0692 | Hypothetical protein. | Hypothetical protein. | 0.525 |
SDW26328.1 | SDW26525.1 | SAMN04488001_0688 | SAMN04488001_0693 | Hypothetical protein. | Uncharacterized conserved protein, contains Mth938-like domain. | 0.525 |
SDW26328.1 | secD | SAMN04488001_0688 | SAMN04488001_0690 | Hypothetical protein. | Preprotein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. | 0.525 |
SDW26328.1 | secF | SAMN04488001_0688 | SAMN04488001_0691 | Hypothetical protein. | Protein translocase subunit secF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. | 0.525 |
SDW26328.1 | serS | SAMN04488001_0688 | SAMN04488001_0687 | Hypothetical protein. | seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec). | 0.563 |
SDW26328.1 | yajC | SAMN04488001_0688 | SAMN04488001_0689 | Hypothetical protein. | Protein translocase subunit yajC; The SecYEG-SecDF-YajC-YidC holo-translocon (HTL) protein secretase/insertase is a supercomplex required for protein secretion, insertion of proteins into membranes, and assembly of membrane protein complexes. While the SecYEG complex is essential for assembly of a number of proteins and complexes, the SecDF-YajC-YidC subcomplex facilitates these functions. | 0.525 |
SDW26487.1 | SDW26328.1 | SAMN04488001_0692 | SAMN04488001_0688 | Hypothetical protein. | Hypothetical protein. | 0.525 |
SDW26487.1 | SDW26525.1 | SAMN04488001_0692 | SAMN04488001_0693 | Hypothetical protein. | Uncharacterized conserved protein, contains Mth938-like domain. | 0.871 |
SDW26487.1 | secD | SAMN04488001_0692 | SAMN04488001_0690 | Hypothetical protein. | Preprotein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. | 0.871 |
SDW26487.1 | secF | SAMN04488001_0692 | SAMN04488001_0691 | Hypothetical protein. | Protein translocase subunit secF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. | 0.871 |
SDW26487.1 | serS | SAMN04488001_0692 | SAMN04488001_0687 | Hypothetical protein. | seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec). | 0.416 |
SDW26487.1 | yajC | SAMN04488001_0692 | SAMN04488001_0689 | Hypothetical protein. | Protein translocase subunit yajC; The SecYEG-SecDF-YajC-YidC holo-translocon (HTL) protein secretase/insertase is a supercomplex required for protein secretion, insertion of proteins into membranes, and assembly of membrane protein complexes. While the SecYEG complex is essential for assembly of a number of proteins and complexes, the SecDF-YajC-YidC subcomplex facilitates these functions. | 0.871 |
SDW26525.1 | SDW10605.1 | SAMN04488001_0693 | SAMN04488001_0295 | Uncharacterized conserved protein, contains Mth938-like domain. | Cation transport protein ChaC; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family. | 0.469 |
SDW26525.1 | SDW26328.1 | SAMN04488001_0693 | SAMN04488001_0688 | Uncharacterized conserved protein, contains Mth938-like domain. | Hypothetical protein. | 0.525 |
SDW26525.1 | SDW26487.1 | SAMN04488001_0693 | SAMN04488001_0692 | Uncharacterized conserved protein, contains Mth938-like domain. | Hypothetical protein. | 0.871 |
SDW26525.1 | SDX01932.1 | SAMN04488001_0693 | SAMN04488001_2265 | Uncharacterized conserved protein, contains Mth938-like domain. | Heme exporter protein B; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family. | 0.456 |
SDW26525.1 | ccmA | SAMN04488001_0693 | SAMN04488001_2264 | Uncharacterized conserved protein, contains Mth938-like domain. | Heme exporter protein A; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family. | 0.456 |
SDW26525.1 | ccmC | SAMN04488001_0693 | SAMN04488001_2266 | Uncharacterized conserved protein, contains Mth938-like domain. | Heme exporter protein C; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family. | 0.456 |
SDW26525.1 | secD | SAMN04488001_0693 | SAMN04488001_0690 | Uncharacterized conserved protein, contains Mth938-like domain. | Preprotein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. | 0.871 |
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