STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW40461.1Hypothetical protein. (308 aa)    
Predicted Functional Partners:
SDW40416.1
TRAP transporter, DctM subunit.
 
 
  0.994
SDW40497.1
Tat (twin-arginine translocation) pathway signal sequence; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
    0.797
SDW18662.1
Hypothetical protein.
  
     0.771
SDW40540.1
Two-component system, NarL family, sensor kinase.
 
     0.745
SDW40582.1
Two component transcriptional regulator, LuxR family.
 
     0.694
SDW79771.1
Phosphate ABC transporter substrate-binding protein, PhoT family.
  
     0.569
SDW40378.1
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.
       0.426
Your Current Organism:
Litoreibacter albidus
NCBI taxonomy Id: 670155
Other names: DSM 26922, JCM 16493, KMM 3851, L. albidus, Litoreibacter albidus Romanenko et al. 2011, NRIC 0773, alpha proteobacterium KMM 3851
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.