STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW59251.1TIGR02302 family protein. (860 aa)    
Predicted Functional Partners:
tolB
TolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.881
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
       0.811
SDW59308.1
Protein of unknown function.
       0.810
SDX24709.1
Hypothetical protein.
  
     0.773
SDX24737.1
N-terminal double-transmembrane domain-containing protein.
  
    0.772
SDX24762.1
Protein of unknown function DUF58.
  
     0.748
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
  
 
  0.716
SDW70424.1
HemY protein.
  
    0.676
SDW21600.1
Tetratricopeptide repeat-containing protein.
  
   
 0.644
SDX03251.1
beta-N-acetylhexosaminidase.
  
  
 0.634
Your Current Organism:
Litoreibacter albidus
NCBI taxonomy Id: 670155
Other names: DSM 26922, JCM 16493, KMM 3851, L. albidus, Litoreibacter albidus Romanenko et al. 2011, NRIC 0773, alpha proteobacterium KMM 3851
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.