STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW80637.1Rubrerythrin. (324 aa)    
Predicted Functional Partners:
SDW80524.1
2-haloacid dehalogenase.
       0.733
SDW80563.1
S-formylglutathione hydrolase; Serine hydrolase involved in the detoxification of formaldehyde.
       0.726
SDW80600.1
Hypothetical protein.
       0.718
SDW80485.1
Ornithine cyclodeaminase.
       0.709
SDW34521.1
Indolepyruvate ferredoxin oxidoreductase.
 
   
 0.539
SDW80678.1
Hypothetical protein.
       0.517
SDW80710.1
Transcriptional regulator, TetR family.
       0.510
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
     
 0.436
SDX29080.1
Molybdopterin synthase subunit MoaD.
   
 
  0.430
SDW44419.1
Cysteine desulfurase.
   
 
  0.424
Your Current Organism:
Litoreibacter albidus
NCBI taxonomy Id: 670155
Other names: DSM 26922, JCM 16493, KMM 3851, L. albidus, Litoreibacter albidus Romanenko et al. 2011, NRIC 0773, alpha proteobacterium KMM 3851
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.