STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW82475.1Zinc-binding alcohol dehydrogenase family protein; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily. (337 aa)    
Predicted Functional Partners:
SDW82512.1
Quinol monooxygenase YgiN.
 
    0.781
SDX01492.1
3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.584
SDX10168.1
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.
  
 0.574
SDW82545.1
Transcriptional regulator, HxlR family.
       0.514
SDW82245.1
ElaA protein.
 
     0.474
SDW82279.1
Glutathione S-transferase.
   
  0.456
SDW82357.1
Glutathione S-transferase.
   
  0.456
SDW82391.1
Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB.
  
    0.413
SDW82321.1
Negative transcriptional regulator, PaiB family.
       0.403
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
       0.403
Your Current Organism:
Litoreibacter albidus
NCBI taxonomy Id: 670155
Other names: DSM 26922, JCM 16493, KMM 3851, L. albidus, Litoreibacter albidus Romanenko et al. 2011, NRIC 0773, alpha proteobacterium KMM 3851
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