STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW96756.1V8-like Glu-specific endopeptidase. (276 aa)    
Predicted Functional Partners:
SDW96717.1
Short-chain dehydrogenase.
       0.639
SDW96684.1
Hypothetical protein.
       0.614
SDW14531.1
TPR repeat-containing protein.
  
     0.515
SDW15925.1
Hypothetical protein.
  
     0.511
SDX03288.1
Sporulation related domain-containing protein.
  
     0.482
SDW28010.1
Hypothetical protein.
  
     0.475
SDW95425.1
Hypothetical protein.
  
     0.447
SDW96643.1
Biotin transport system substrate-specific component.
       0.440
SDW27686.1
ABC transporter, phosphonate, substrate-binding protein.
   
    0.437
SDX47898.1
Phosphonate transport system substrate-binding protein.
   
    0.437
Your Current Organism:
Litoreibacter albidus
NCBI taxonomy Id: 670155
Other names: DSM 26922, JCM 16493, KMM 3851, L. albidus, Litoreibacter albidus Romanenko et al. 2011, NRIC 0773, alpha proteobacterium KMM 3851
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.