STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX03657.1Protein of unknown function. (454 aa)    
Predicted Functional Partners:
SDX03692.1
Hypothetical protein.
       0.871
SDX03728.1
Hypothetical protein.
       0.871
SDW39408.1
Hypothetical protein.
  
     0.734
SDW93322.1
Hypothetical protein.
  
     0.713
SDX28281.1
Hypothetical protein.
  
     0.712
SDX49850.1
Beta-barrel assembly machine subunit BamF.
  
     0.708
SDW64125.1
Hypothetical protein.
  
     0.675
SDW42053.1
Holin of 3TMs, for gene-transfer release.
  
     0.667
SDX03623.1
MoxR-like ATPase.
       0.667
SDW28977.1
Trypsin-like peptidase domain-containing protein.
  
     0.653
Your Current Organism:
Litoreibacter albidus
NCBI taxonomy Id: 670155
Other names: DSM 26922, JCM 16493, KMM 3851, L. albidus, Litoreibacter albidus Romanenko et al. 2011, NRIC 0773, alpha proteobacterium KMM 3851
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.