STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX11985.1TRAP transporter, DctM subunit. (436 aa)    
Predicted Functional Partners:
SDX12054.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
    0.891
SDX12017.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
     0.869
SDX11949.1
Gluconolactonase.
       0.741
SDX58181.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.735
SDX55323.1
C4-dicarboxylate-binding protein DctP.
 
    0.724
SDX11881.1
Uncharacterized peroxidase-related enzyme.
       0.721
SDX11915.1
Uncharacterized OsmC-related protein.
       0.721
SDX32723.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.717
SDX57752.1
Tripartite ATP-independent transporter solute receptor, DctP family.
  
    0.678
SDX55271.1
C4-dicarboxylate transporter, DctQ subunit.
  
  0.620
Your Current Organism:
Litoreibacter albidus
NCBI taxonomy Id: 670155
Other names: DSM 26922, JCM 16493, KMM 3851, L. albidus, Litoreibacter albidus Romanenko et al. 2011, NRIC 0773, alpha proteobacterium KMM 3851
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.