STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX12374.1Protein of unknown function. (194 aa)    
Predicted Functional Partners:
SDX12336.1
Protein of unknown function; Manually curated.
 
    0.991
SDX12402.1
Chaperone TorD involved in molybdoenzyme TorA maturation.
     0.986
SDX12441.1
Formate dehydrogenase region TAT target.
 
     0.942
SDX12302.1
4Fe-4S dicluster domain-containing protein.
 
     0.930
SDX12478.1
Formate dehydrogenase alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
     0.884
SDX12160.1
Hypothetical protein.
 
     0.880
SDX12197.1
Biotin-(acetyl-CoA carboxylase) ligase.
 
     0.880
SDX12269.1
Hypothetical protein.
 
     0.873
SDX12548.1
Formate dehydrogenase gamma subunit.
 
     0.854
SDX12512.1
Formate dehydrogenase beta subunit.
 
     0.832
Your Current Organism:
Litoreibacter albidus
NCBI taxonomy Id: 670155
Other names: DSM 26922, JCM 16493, KMM 3851, L. albidus, Litoreibacter albidus Romanenko et al. 2011, NRIC 0773, alpha proteobacterium KMM 3851
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