STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX17159.1Repeat domain-containing protein. (494 aa)    
Predicted Functional Partners:
SDX17185.1
Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain.
 
     0.967
SDX17218.1
Xylose-binding protein.
 
     0.914
SDX17253.1
D-xylose transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
     0.855
SDX17285.1
D-xylose transport system ATP-binding protein.
 
     0.818
SDX17129.1
Cytochrome c peroxidase.
  
   
 0.788
ribB
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.744
SDX24018.1
Cytochrome c peroxidase.
  
   
 0.675
SDW30583.1
Monosaccharide ABC transporter ATP-binding protein, CUT2 family.
 
     0.655
xylA
D-xylose isomerase; Belongs to the xylose isomerase family.
 
     0.629
xylB
Xylulokinase.
 
     0.475
Your Current Organism:
Litoreibacter albidus
NCBI taxonomy Id: 670155
Other names: DSM 26922, JCM 16493, KMM 3851, L. albidus, Litoreibacter albidus Romanenko et al. 2011, NRIC 0773, alpha proteobacterium KMM 3851
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.