STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX24423.1OmpA family protein. (212 aa)    
Predicted Functional Partners:
SDX24390.1
Hypothetical protein.
 
    
0.823
SDX63641.1
Type VI secretion system protein ImpK.
 
 0.725
SDW80022.1
OmpA-OmpF porin, OOP family.
  
     0.706
SDX62825.1
OmpA family protein.
  
     0.656
SDW14711.1
OmpA family protein.
  
     0.652
SDW28327.1
Hypothetical protein.
  
    0.618
SDW65033.1
Outer membrane protein OmpA.
  
     0.606
tolB
TolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 0.568
SDX10364.1
Hypothetical protein.
  
     0.556
SDW79771.1
Phosphate ABC transporter substrate-binding protein, PhoT family.
  
 
  0.518
Your Current Organism:
Litoreibacter albidus
NCBI taxonomy Id: 670155
Other names: DSM 26922, JCM 16493, KMM 3851, L. albidus, Litoreibacter albidus Romanenko et al. 2011, NRIC 0773, alpha proteobacterium KMM 3851
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.