STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX40320.1Hypothetical protein. (1176 aa)    
Predicted Functional Partners:
SDX40279.1
Conserved repeat domain-containing protein; Partial gene; manually curated.
     0.941
SDW93842.1
Conserved repeat domain-containing protein.
 
     0.794
SDW19098.1
Saccharopine dehydrogenase, NADP-dependent.
  
     0.612
SDX48860.1
DNA translocase FtsK.
    
   0.592
SDX26376.1
Phage shock protein A (PspA) family protein.
  
     0.535
SDX44454.1
Hypothetical protein.
   
 0.527
SDW34314.1
Hypothetical protein.
  
 
  0.523
SDX03384.1
SpoIIAA-like.
  
     0.509
SDW81149.1
Hint domain-containing protein.
  
 
  0.479
SDW70367.1
Hemoglobin/transferrin/lactoferrin receptor protein.
    
   0.478
Your Current Organism:
Litoreibacter albidus
NCBI taxonomy Id: 670155
Other names: DSM 26922, JCM 16493, KMM 3851, L. albidus, Litoreibacter albidus Romanenko et al. 2011, NRIC 0773, alpha proteobacterium KMM 3851
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.