STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX43380.1Asp/Glu/hydantoin racemase. (219 aa)    
Predicted Functional Partners:
SDW98042.1
OHCU decarboxylase.
 
  
  0.910
SDX43409.1
4-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family.
 
     0.900
SDX43351.1
Cytosine/adenosine deaminase.
 
     0.824
SDX43258.1
Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain-containing protein; Belongs to the ABC transporter superfamily.
       0.776
SDX43290.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.776
SDX43226.1
Peptide/nickel transport system permease protein.
       0.773
SDX43315.1
Peptide/nickel transport system substrate-binding protein.
       0.773
SDX43446.1
3-oxoacyl-[acyl-carrier protein] reductase.
       0.762
SDX43077.1
Dihydropyrimidinase.
 
  
  0.752
SDX43196.1
Peptide/nickel transport system permease protein.
       0.752
Your Current Organism:
Litoreibacter albidus
NCBI taxonomy Id: 670155
Other names: DSM 26922, JCM 16493, KMM 3851, L. albidus, Litoreibacter albidus Romanenko et al. 2011, NRIC 0773, alpha proteobacterium KMM 3851
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.