STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX56537.1Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily. (558 aa)    
Predicted Functional Partners:
SDX56575.1
Peptide/nickel transport system permease protein.
 
  0.917
SDX56614.1
Peptide/nickel transport system permease protein.
 
 
  0.887
SDX56648.1
Peptide/nickel transport system substrate-binding protein.
 
 
  0.700
SDX57960.1
Peptide/nickel transport system permease protein.
 
 
  0.697
SDX43226.1
Peptide/nickel transport system permease protein.
 
 
  0.686
SDX44641.1
Assimilatory nitrate reductase (NADH) alpha subunit apoprotein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
    
  0.686
SDW61439.1
Peptide/nickel transport system permease protein.
 
 
  0.664
SDX29363.1
Peptide/nickel transport system permease protein.
 
 
  0.645
SDW22271.1
Peptide/nickel transport system permease protein.
 
 
  0.641
SDX57821.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 
 
0.617
Your Current Organism:
Litoreibacter albidus
NCBI taxonomy Id: 670155
Other names: DSM 26922, JCM 16493, KMM 3851, L. albidus, Litoreibacter albidus Romanenko et al. 2011, NRIC 0773, alpha proteobacterium KMM 3851
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.