STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGK56452.1AsmA family protein; COG2982 Uncharacterized protein involved in outer membrane biogenesis. (1394 aa)    
Predicted Functional Partners:
AGK57709.1
Invasion associated locus B family protein.
  
     0.764
AGK57681.1
Apolipoprotein A1/A4/E.
  
     0.762
AGK57540.1
Sporulation domain-containing protein.
  
    0.760
AGK59271.1
Hypothetical protein.
  
     0.753
AGK57880.1
Hypothetical protein.
  
     0.749
AGK59933.1
Hypothetical protein.
  
     0.749
AGK58748.1
Hypothetical protein.
 
   
 0.740
AGK57535.1
Sel1 domain-containing protein repeat-containing protein; COG0790 FOG: TPR repeat, SEL1 subfamily.
  
     0.730
AGK59670.1
Phasin.
  
     0.730
AGK57250.1
Hypothetical protein.
  
     0.711
Your Current Organism:
Hyphomicrobium denitrificans 1NES1
NCBI taxonomy Id: 670307
Other names: H. denitrificans 1NES1, Hyphomicrobium denitrificans str. 1NES1, Hyphomicrobium denitrificans strain 1NES1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.