STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGK56544.1Peptidase; COG3212 Predicted membrane protein. (113 aa)    
Predicted Functional Partners:
AGK56546.1
COG0642 Signal transduction histidine kinase.
 
  
 0.951
AGK56545.1
Two component transcriptional regulator; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
 
    0.909
AGK58048.1
COG0642 Signal transduction histidine kinase.
 
  
 0.798
AGK56366.1
COG0642 Signal transduction histidine kinase.
 
  
 0.665
AGK56237.1
Alpha-2-macroglobulin; COG2373 Large extracellular alpha-helical protein.
  
     0.619
AGK56543.1
Hypothetical protein.
 
     0.593
AGK58047.1
COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
 
    0.569
AGK56541.1
COG3658 Cytochrome b.
 
     0.557
AGK58079.1
COG0642 Signal transduction histidine kinase.
 
  
 0.530
AGK56547.1
COG1814 Uncharacterized membrane protein.
       0.516
Your Current Organism:
Hyphomicrobium denitrificans 1NES1
NCBI taxonomy Id: 670307
Other names: H. denitrificans 1NES1, Hyphomicrobium denitrificans str. 1NES1, Hyphomicrobium denitrificans strain 1NES1
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.