Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AGK56583.1 | AGK56584.1 | HYPDE_24488 | HYPDE_24493 | Hypothetical protein. | NAD-dependent epimerase/dehydratase; COG0451 Nucleoside-diphosphate-sugar epimerases. | 0.594 |
AGK56583.1 | AGK56586.1 | HYPDE_24488 | HYPDE_24503 | Hypothetical protein. | COG0625 Glutathione S-transferase. | 0.600 |
AGK56583.1 | AGK57612.1 | HYPDE_24488 | HYPDE_29688 | Hypothetical protein. | GAF sensor hybrid histidine kinase; COG2770 FOG: HAMP domain. | 0.552 |
AGK56583.1 | AGK57982.1 | HYPDE_24488 | HYPDE_31538 | Hypothetical protein. | Integral membrane sensor hybrid histidine kinase; COG0642 Signal transduction histidine kinase. | 0.421 |
AGK56583.1 | AGK58633.1 | HYPDE_24488 | HYPDE_34808 | Hypothetical protein. | Chemotaxis protein CheB; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.404 |
AGK56583.1 | glpK | HYPDE_24488 | HYPDE_38228 | Hypothetical protein. | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | 0.400 |
AGK56583.1 | queG | HYPDE_24488 | HYPDE_24498 | Hypothetical protein. | Hypothetical protein; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr); Belongs to the QueG family. | 0.594 |
AGK56583.1 | uppP | HYPDE_24488 | HYPDE_24508 | Hypothetical protein. | Undecaprenyl pyrophosphate phosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family. | 0.440 |
AGK56584.1 | AGK56583.1 | HYPDE_24493 | HYPDE_24488 | NAD-dependent epimerase/dehydratase; COG0451 Nucleoside-diphosphate-sugar epimerases. | Hypothetical protein. | 0.594 |
AGK56584.1 | AGK56586.1 | HYPDE_24493 | HYPDE_24503 | NAD-dependent epimerase/dehydratase; COG0451 Nucleoside-diphosphate-sugar epimerases. | COG0625 Glutathione S-transferase. | 0.870 |
AGK56584.1 | AGK57612.1 | HYPDE_24493 | HYPDE_29688 | NAD-dependent epimerase/dehydratase; COG0451 Nucleoside-diphosphate-sugar epimerases. | GAF sensor hybrid histidine kinase; COG2770 FOG: HAMP domain. | 0.407 |
AGK56584.1 | queG | HYPDE_24493 | HYPDE_24498 | NAD-dependent epimerase/dehydratase; COG0451 Nucleoside-diphosphate-sugar epimerases. | Hypothetical protein; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr); Belongs to the QueG family. | 0.825 |
AGK56584.1 | uppP | HYPDE_24493 | HYPDE_24508 | NAD-dependent epimerase/dehydratase; COG0451 Nucleoside-diphosphate-sugar epimerases. | Undecaprenyl pyrophosphate phosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family. | 0.555 |
AGK56586.1 | AGK56583.1 | HYPDE_24503 | HYPDE_24488 | COG0625 Glutathione S-transferase. | Hypothetical protein. | 0.600 |
AGK56586.1 | AGK56584.1 | HYPDE_24503 | HYPDE_24493 | COG0625 Glutathione S-transferase. | NAD-dependent epimerase/dehydratase; COG0451 Nucleoside-diphosphate-sugar epimerases. | 0.870 |
AGK56586.1 | queG | HYPDE_24503 | HYPDE_24498 | COG0625 Glutathione S-transferase. | Hypothetical protein; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr); Belongs to the QueG family. | 0.825 |
AGK56586.1 | uppP | HYPDE_24503 | HYPDE_24508 | COG0625 Glutathione S-transferase. | Undecaprenyl pyrophosphate phosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family. | 0.587 |
AGK57612.1 | AGK56583.1 | HYPDE_29688 | HYPDE_24488 | GAF sensor hybrid histidine kinase; COG2770 FOG: HAMP domain. | Hypothetical protein. | 0.552 |
AGK57612.1 | AGK56584.1 | HYPDE_29688 | HYPDE_24493 | GAF sensor hybrid histidine kinase; COG2770 FOG: HAMP domain. | NAD-dependent epimerase/dehydratase; COG0451 Nucleoside-diphosphate-sugar epimerases. | 0.407 |
AGK57612.1 | AGK57982.1 | HYPDE_29688 | HYPDE_31538 | GAF sensor hybrid histidine kinase; COG2770 FOG: HAMP domain. | Integral membrane sensor hybrid histidine kinase; COG0642 Signal transduction histidine kinase. | 0.983 |
page 1 of 2