STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGK56957.1COG4993 Glucose dehydrogenase. (607 aa)    
Predicted Functional Partners:
AGK57929.1
Formaldehyde-activating enzyme.
     
 0.904
AGK58400.1
Formaldehyde-activating enzyme.
     
 0.901
AGK57670.1
Family 3 extracellular solute-binding protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
 
  
 0.792
AGK57665.1
Hypothetical protein; COG0841 Cation/multidrug efflux pump.
  
     0.760
AGK57669.1
Hypothetical protein; COG2010 Cytochrome c, mono- and diheme variants.
 
  
 0.748
AGK57986.1
COG2010 Cytochrome c, mono- and diheme variants.
 
  
 0.748
AGK57943.1
40-residue YVTN family beta-propeller repeat protein.
  
    0.711
AGK57942.1
Hypothetical protein.
 
    0.709
AGK56865.1
Sulfur oxidation protein SoxZ; COG5501 Predicted secreted protein.
 
     0.695
AGK57662.1
Polyketide cyclase/dehydrase.
  
     0.683
Your Current Organism:
Hyphomicrobium denitrificans 1NES1
NCBI taxonomy Id: 670307
Other names: H. denitrificans 1NES1, Hyphomicrobium denitrificans str. 1NES1, Hyphomicrobium denitrificans strain 1NES1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.